PH01004652G0060's details annotation
1.Annotation
ICBR annotation: ESP1, putative, expressed
Blast result AT1G73840 : 2.60E-29
Blast annotation: hydroxyproline-rich glycoprotein family protein
2.Location
Scaffold: PH01004652
Strand: -
| Region | Start | End |
| gene | 62442 | 70553 |
| mRNA | 62442 | 70553 |
| exon | 62442 | 62949 |
| exon | 66489 | 66674 |
| exon | 67662 | 67760 |
| exon | 67842 | 68378 |
| exon | 68489 | 68527 |
| exon | 69293 | 69370 |
| exon | 69512 | 70553 |
| CDS | 62677 | 62949 |
| CDS | 66489 | 66674 |
| CDS | 67662 | 67760 |
| CDS | 67842 | 68378 |
| CDS | 68489 | 68527 |
| CDS | 69293 | 69370 |
| CDS | 69512 | 69607 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14327.5 | CSTF2_hinge | 5 | 72 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0007154 | cell communication |
| GO:0035091 | phosphatidylinositol binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.