Annotation of co-expression genes

PH01004747G0010's details annotation

1.Annotation

ICBR annotation: DJ-1 family protein, putative, expressed

Blast result AT1G53280 : 3.00E-131
Blast annotation: Class I glutamine amidotransferase-like superfamily protein

2.Location

Scaffold: PH01004747
Strand: +

RegionStartEnd
gene180312125
mRNA180312125
exon18032839
exon38754024
exon41124294
exon50055085
exon60006200
exon62796419
exon65326720
exon75908160
exon89789498
exon970310290
exon1041010614
exon1081010970
exon1147112125
CDS26692839
CDS38754024
CDS41124294
CDS50055085
CDS60006200
CDS62796419
CDS65326720
CDS75908160
CDS89789498
CDS970310290
CDS1041010614
CDS1081010970
CDS1147112001

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001563

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01965.23DJ-1_PfpI1154
PF01965.23DJ-1_PfpI195357
PF03732.16Retrotrans_gag477563

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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