PH01004759G0060's details annotation
1.Annotation
ICBR annotation: phospholipase C, putative, expressed
Blast result AT5G67130 : 1.50E-44
Blast annotation: PLC-like phosphodiesterases superfamily protein
2.Location
Scaffold: PH01004759
Strand: -
| Region | Start | End |
| gene | 28120 | 29531 |
| mRNA | 28120 | 29531 |
| exon | 28120 | 28661 |
| exon | 28946 | 29032 |
| exon | 29120 | 29531 |
| CDS | 28476 | 28661 |
| CDS | 28946 | 29032 |
| CDS | 29120 | 29350 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000281 | fatty-acyl-CoA_biosynthetic_process metabolic process, lipid metabolic process, Valine,_leucine_and_isoleucine_degradation TUB Transcription_Regulator(from iTAK) STE_STE11 (from iTAK) dihydrolipoyllysine-residue_(2-methylpropanoyl)transferase_activity alpha-Linolenic_acid_metabolism Linoleic_acid_metabolism Steroid_biosynthesis Arachidonic_acid_metabolism Ether_lipid_metabolism biotin_carboxylase_activity Glycerolipid_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006629 | lipid metabolic process |
| GO:0008081 | phosphoric diester hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.