PH01004820G0060's details annotation
1.Annotation
ICBR annotation: relA-SpoT like protein RSH1, putative, expressed
Blast result AT4G02260 : 0.00E+00
Blast annotation: RELA/SPOT homolog 1
2.Location
Scaffold: PH01004820
Strand: +
| Region | Start | End |
| gene | 36071 | 50423 |
| mRNA | 36071 | 50423 |
| exon | 36071 | 37049 |
| exon | 38050 | 38215 |
| exon | 38286 | 38341 |
| exon | 38954 | 39047 |
| exon | 40036 | 40221 |
| exon | 40821 | 40886 |
| exon | 41015 | 41107 |
| exon | 41213 | 41344 |
| exon | 41457 | 41558 |
| exon | 41649 | 41726 |
| exon | 41802 | 41873 |
| exon | 43074 | 43171 |
| exon | 43694 | 43754 |
| exon | 43905 | 43967 |
| exon | 44055 | 44111 |
| exon | 44196 | 44297 |
| exon | 44405 | 44563 |
| exon | 44635 | 44676 |
| exon | 45642 | 45773 |
| exon | 45847 | 45933 |
| exon | 46005 | 46076 |
| exon | 47437 | 47733 |
| exon | 48665 | 48751 |
| exon | 48831 | 49281 |
| exon | 49617 | 49678 |
| exon | 49884 | 49952 |
| exon | 50039 | 50423 |
| CDS | 36949 | 37049 |
| CDS | 38050 | 38215 |
| CDS | 38286 | 38341 |
| CDS | 38954 | 39047 |
| CDS | 40036 | 40221 |
| CDS | 40821 | 40886 |
| CDS | 41015 | 41107 |
| CDS | 41213 | 41344 |
| CDS | 41457 | 41558 |
| CDS | 41649 | 41726 |
| CDS | 41802 | 41873 |
| CDS | 43074 | 43171 |
| CDS | 43694 | 43754 |
| CDS | 43905 | 43967 |
| CDS | 44055 | 44111 |
| CDS | 44196 | 44297 |
| CDS | 44405 | 44563 |
| CDS | 44635 | 44676 |
| CDS | 45642 | 45773 |
| CDS | 45847 | 45933 |
| CDS | 46005 | 46076 |
| CDS | 47437 | 47733 |
| CDS | 48665 | 48751 |
| CDS | 48831 | 49281 |
| CDS | 49617 | 49678 |
| CDS | 49884 | 49952 |
| CDS | 50039 | 50131 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000637 | guanosine tetraphosphate metabolic process, carotenoid biosynthetic process, Carotenoid_biosynthesis Purine_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13328.5 | HD_4 | 221 | 378 |
| PF04607.16 | RelA_SpoT | 411 | 527 |
| PF02824.20 | TGS | 612 | 671 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Purine metabolism | GTP pyrophosphokinase [EC:2.7.6.5] | ko00230 | K00951 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0015969 | guanosine tetraphosphate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.