Annotation of co-expression genes

PH01004876G0080's details annotation

1.Annotation

ICBR annotation: OsWAK11 - OsWAK receptor-like protein kinase

Blast result AT1G21250 : 6.00E-129
Blast annotation: cell wall-associated kinase

2.Location

Scaffold: PH01004876
Strand: +

RegionStartEnd
gene3731140895
mRNA3731140895
exon3731138389
exon3868438845
exon3933039377
exon3959440895
CDS3747438389
CDS3868438845
CDS3933039377
CDS3959440807

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13947.5GUB_WAK_bind40142
PF07645.14EGF_CA306347
PF00069.24Pkinase454718

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005509calcium ion binding
GO:0005515protein binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups
GO:0030247polysaccharide binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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