PH01005219G0020's details annotation
1.Annotation
ICBR annotation: CAAX amino terminal protease family protein, putative, expressed
Blast result AT3G26085 : 4.00E-58
Blast annotation: CAAX amino terminal protease family protein
2.Location
Scaffold: PH01005219
Strand: +
| Region | Start | End |
| gene | 14488 | 19130 |
| mRNA | 14488 | 19130 |
| exon | 14488 | 14982 |
| exon | 15559 | 15617 |
| exon | 15704 | 15955 |
| exon | 16639 | 16696 |
| exon | 16797 | 16921 |
| exon | 17470 | 17532 |
| exon | 17894 | 18018 |
| exon | 18226 | 18251 |
| exon | 18821 | 19130 |
| CDS | 14931 | 14982 |
| CDS | 15559 | 15617 |
| CDS | 15704 | 15955 |
| CDS | 16639 | 16696 |
| CDS | 16797 | 16921 |
| CDS | 17470 | 17532 |
| CDS | 17894 | 18018 |
| CDS | 18226 | 18251 |
| CDS | 18821 | 18993 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02517.15 | Abi | 192 | 253 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.