PH01005293G0030's details annotation
1.Annotation
ICBR annotation: polypyrimidine tract-binding protein, putative, expressed
Blast result AT3G01150 : 3.00E-157
Blast annotation: polypyrimidine tract-binding protein 1
2.Location
Scaffold: PH01005293
Strand: +
| Region | Start | End |
| gene | 17986 | 23717 |
| mRNA | 17986 | 23717 |
| exon | 17986 | 18453 |
| exon | 19834 | 20043 |
| exon | 20628 | 20690 |
| exon | 20753 | 20841 |
| exon | 21129 | 21186 |
| exon | 21277 | 21381 |
| exon | 21490 | 21571 |
| exon | 22540 | 22652 |
| exon | 22887 | 23717 |
| CDS | 18271 | 18453 |
| CDS | 19834 | 20043 |
| CDS | 20628 | 20690 |
| CDS | 20753 | 20841 |
| CDS | 21129 | 21186 |
| CDS | 21277 | 21381 |
| CDS | 21490 | 21571 |
| CDS | 22540 | 22652 |
| CDS | 22887 | 23306 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000697 | Valine,_leucine_and_isoleucine_biosynthesis Valine,_leucine_and_isoleucine_degradation |
| coexpression network | CFinderM001055 | NF-YB Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00076.21 | RRM_1 | 21 | 71 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.