PH01005309G0060's details annotation
1.Annotation
ICBR annotation: ATTIC110/TIC110, putative, expressed
Blast result AT1G06950 : 8.70E-81
Blast annotation: translocon at the inner envelope membrane of chloroplasts 110
2.Location
Scaffold: PH01005309
Strand: +
| Region | Start | End |
| gene | 36973 | 44443 |
| mRNA | 36973 | 44443 |
| exon | 36973 | 37564 |
| exon | 37780 | 37868 |
| exon | 38238 | 38297 |
| exon | 39739 | 39862 |
| exon | 39997 | 40065 |
| exon | 40165 | 40263 |
| exon | 41213 | 41279 |
| exon | 41482 | 41546 |
| exon | 41837 | 41918 |
| exon | 42709 | 42804 |
| exon | 43786 | 43886 |
| exon | 44067 | 44443 |
| CDS | 37361 | 37564 |
| CDS | 37780 | 37868 |
| CDS | 38238 | 38297 |
| CDS | 39739 | 39862 |
| CDS | 39997 | 40065 |
| CDS | 40165 | 40263 |
| CDS | 41213 | 41279 |
| CDS | 41482 | 41546 |
| CDS | 41837 | 41918 |
| CDS | 42709 | 42804 |
| CDS | 43786 | 43886 |
| CDS | 44067 | 44102 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16940.4 | Tic110 | 51 | 352 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.