PH01005398G0070's details annotation
1.Annotation
ICBR annotation: PTAC5, putative, expressed
Blast result AT4G13670 : 1.40E-72
Blast annotation: plastid transcriptionally active 5
2.Location
Scaffold: PH01005398
Strand: +
| Region | Start | End |
| gene | 44958 | 48348 |
| mRNA | 44958 | 48348 |
| exon | 44958 | 46376 |
| exon | 46745 | 46840 |
| exon | 46940 | 47032 |
| exon | 47338 | 47572 |
| exon | 48009 | 48046 |
| exon | 48135 | 48348 |
| CDS | 45867 | 46376 |
| CDS | 46745 | 46840 |
| CDS | 46940 | 47032 |
| CDS | 47338 | 47572 |
| CDS | 48009 | 48046 |
| CDS | 48135 | 48236 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01471.17 | PG_binding_1 | 163 | 221 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0031072 | heat shock protein binding |
| GO:0051082 | unfolded protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.