PH01005399G0020's details annotation
1.Annotation
ICBR annotation: uncharacterized UPF0114 domain containing protein, expressed
Blast result AT4G19390 : 2.00E-27
Blast annotation: Uncharacterised protein family (UPF0114)
2.Location
Scaffold: PH01005399
Strand: +
| Region | Start | End |
| gene | 36777 | 39210 |
| mRNA | 36777 | 39210 |
| exon | 36777 | 37227 |
| exon | 37315 | 37392 |
| exon | 37492 | 37591 |
| exon | 37694 | 37824 |
| exon | 37916 | 39210 |
| CDS | 36832 | 37227 |
| CDS | 37315 | 37392 |
| CDS | 37492 | 37591 |
| CDS | 37694 | 37824 |
| CDS | 37916 | 38149 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03350.15 | UPF0114 | 135 | 269 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.