Annotation of co-expression genes

PH01005548G0110's details annotation

1.Annotation

ICBR annotation: enolase, putative, expressed

Blast result AT2G36530 : 0.00E+00
Blast annotation: Enolase

2.Location

Scaffold: PH01005548
Strand: +

RegionStartEnd
gene5219357352
mRNA5219357352
exon5219352891
exon5299853061
exon5405354117
exon5453754584
exon5467154757
exon5485554935
exon5502255123
exon5520055280
exon5535655430
exon5587055932
exon5602256102
exon5622656420
exon5650456554
exon5667056758
exon5684656897
exon5698657042
exon5718157352
CDS5282352891
CDS5299853061
CDS5405354117
CDS5453754584
CDS5467154757
CDS5485554935
CDS5502255123
CDS5520055280
CDS5535655430
CDS5587055932
CDS5602256102
CDS5622656420
CDS5650456554
CDS5667056758
CDS5684656897
CDS5698657042
CDS5718157261

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03952.15Enolase_N5140
PF00113.21Enolase_C149441

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glycolysis / Gluconeogenesisenolase [EC:4.2.1.11]ko00010K01689
Methane metabolismenolase [EC:4.2.1.11]ko00680K01689
RNA degradationenolase [EC:4.2.1.11]ko03018K01689

10.Gene Ontology

GO AccessionGO Annotation
GO:0000015phosphopyruvate hydratase complex
GO:0000287magnesium ion binding
GO:0004634phosphopyruvate hydratase activity
GO:0006096glycolysis

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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