PH01005572G0080's details annotation
1.Annotation
ICBR annotation: hydrolase, putative, expressed
Blast result AT1G51760 : 2.00E-122
Blast annotation: peptidase M20/M25/M40 family protein
2.Location
Scaffold: PH01005572
Strand: -
| Region | Start | End |
| gene | 40455 | 46731 |
| mRNA | 40455 | 46731 |
| exon | 40455 | 40930 |
| exon | 41963 | 42043 |
| exon | 42963 | 43277 |
| exon | 44849 | 44974 |
| exon | 46262 | 46731 |
| CDS | 40520 | 40930 |
| CDS | 41963 | 42043 |
| CDS | 42963 | 43277 |
| CDS | 44849 | 44974 |
| CDS | 46262 | 46600 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000285 | ABC_transporters |
| coexpression network | CFinderM000714 | nitrogen compound metabolic process, |
| coexpression network | CFinderM001677 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, nitrogen compound metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01546.27 | Peptidase_M20 | 102 | 402 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.