PH01005591G0050's details annotation
1.Annotation
ICBR annotation: ZOS3-24 - C2H2 zinc finger protein, expressed
Blast result AT1G34370 : 9.30E-87
Blast annotation: C2H2 and C2HC zinc fingers superfamily protein
2.Location
Scaffold: PH01005591
Strand: -
| Region | Start | End |
| gene | 46957 | 50223 |
| mRNA | 46957 | 50223 |
| exon | 46957 | 47394 |
| exon | 47605 | 47763 |
| exon | 48945 | 50223 |
| CDS | 47330 | 47394 |
| CDS | 47605 | 47763 |
| CDS | 48945 | 49935 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | C2H2 |
| Transcription_Regulator(from PlantTFDB) | C2H2 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12874.6 | zf-met | 177 | 198 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.