PH01005628G0100's details annotation
1.Annotation
ICBR annotation: HD domain containing protein 2, putative, expressed
Blast result AT1G26160 : 6.70E-26
Blast annotation: Metal-dependent phosphohydrolase
2.Location
Scaffold: PH01005628
Strand: -
| Region | Start | End |
| gene | 45587 | 47752 |
| mRNA | 45587 | 47752 |
| exon | 45587 | 45760 |
| exon | 45970 | 46007 |
| exon | 46172 | 46296 |
| exon | 46520 | 46627 |
| exon | 46847 | 46919 |
| exon | 47084 | 47221 |
| exon | 47401 | 47752 |
| CDS | 45705 | 45760 |
| CDS | 45970 | 46007 |
| CDS | 46172 | 46296 |
| CDS | 46520 | 46627 |
| CDS | 46847 | 46919 |
| CDS | 47084 | 47221 |
| CDS | 47401 | 47534 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13023.5 | HD_3 | 153 | 221 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008081 | phosphoric diester hydrolase activity |
| GO:0046872 | metal ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.