PH01005814G0060's details annotation
1.Annotation
ICBR annotation: serine palmitoyltransferase 2, putative, expressed
Blast result AT5G23670 : 0.00E+00
Blast annotation: long chain base2
2.Location
Scaffold: PH01005814
Strand: -
| Region | Start | End |
| gene | 29479 | 34890 |
| mRNA | 29479 | 34890 |
| exon | 29479 | 29636 |
| exon | 29734 | 29841 |
| exon | 29983 | 30149 |
| exon | 30260 | 30386 |
| exon | 30479 | 30640 |
| exon | 30805 | 30968 |
| exon | 31057 | 31150 |
| exon | 31241 | 31365 |
| exon | 31453 | 31598 |
| exon | 31906 | 31994 |
| exon | 32128 | 32149 |
| exon | 32739 | 32827 |
| exon | 33682 | 33747 |
| exon | 33842 | 34890 |
| CDS | 29544 | 29636 |
| CDS | 29734 | 29841 |
| CDS | 29983 | 30149 |
| CDS | 30260 | 30386 |
| CDS | 30479 | 30640 |
| CDS | 30805 | 30968 |
| CDS | 31057 | 31150 |
| CDS | 31241 | 31365 |
| CDS | 31453 | 31598 |
| CDS | 31906 | 31994 |
| CDS | 32128 | 32149 |
| CDS | 32739 | 32827 |
| CDS | 33682 | 33747 |
| CDS | 33842 | 33967 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000016 | protein phosphorylation, protein kinase activity, transferase activity, transferring phosphorus-containing groups, protein serine/threonine kinase activity, ATP binding, RLK-Pelle_LRR-XII-1 (from iTAK) RLK-Pelle_DLSV (from iTAK) RLK-Pelle_WAK (from iTAK) ADP_binding polysaccharide_binding transmembrane_transporter_activity WRKY Transcription_Regulator(from PlantTFDB) recognition of pollen, transmembrane transport, defense response, RLK-Pelle_L-LEC (from iTAK) membrane, integral to membrane, RLK-Pelle_SD-2b (from iTAK) RLK-Pelle_WAK_LRK10L-1 (from iTAK) ATPase activity, substrate-specific transmembrane transporter activity, RLK-Pelle_LRR-XI-1 (from iTAK) 6-phosphofructokinase complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00155.20 | Aminotran_1_2 | 138 | 497 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Sphingolipid metabolism | serine palmitoyltransferase [EC:2.3.1.50] | ko00600 | K00654 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0008152 | metabolic process |
| GO:0009058 | biosynthetic process |
| GO:0016740 | transferase activity |
| GO:0030170 | pyridoxal phosphate binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.