PH01005842G0030's details annotation
1.Annotation
ICBR annotation: 40S ribosomal protein S10, putative, expressed
Blast result AT5G52650 : 1.10E-42
Blast annotation: RNA binding Plectin/S10 domain-containing protein
2.Location
Scaffold: PH01005842
Strand: -
| Region | Start | End |
| gene | 28285 | 31432 |
| mRNA | 28285 | 31432 |
| exon | 28285 | 29063 |
| exon | 29649 | 29784 |
| exon | 30415 | 30697 |
| exon | 30898 | 30997 |
| exon | 31335 | 31432 |
| CDS | 28983 | 29063 |
| CDS | 29649 | 29784 |
| CDS | 30415 | 30697 |
| CDS | 30898 | 30997 |
| CDS | 31335 | 31337 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03501.14 | S10_plectin | 3 | 94 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | small subunit ribosomal protein S10e | ko03011 | K02947 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.