PH01005876G0050's details annotation
1.Annotation
ICBR annotation: vacuolar-processing enzyme precursor, putative, expressed
Blast result AT1G62710 : 0.00E+00
Blast annotation: beta vacuolar processing enzyme
2.Location
Scaffold: PH01005876
Strand: -
| Region | Start | End |
| gene | 21867 | 26276 |
| mRNA | 21867 | 26276 |
| exon | 21867 | 22128 |
| exon | 22255 | 22461 |
| exon | 23075 | 23281 |
| exon | 23356 | 23404 |
| exon | 23772 | 23971 |
| exon | 24046 | 24131 |
| exon | 24211 | 24367 |
| exon | 24988 | 25152 |
| exon | 26046 | 26276 |
| CDS | 21946 | 22128 |
| CDS | 22255 | 22461 |
| CDS | 23075 | 23281 |
| CDS | 23356 | 23404 |
| CDS | 23772 | 23971 |
| CDS | 24046 | 24131 |
| CDS | 24211 | 24367 |
| CDS | 24988 | 25152 |
| CDS | 26046 | 26270 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01650.17 | Peptidase_C13 | 58 | 329 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004197 | cysteine-type endopeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.