PH01005876G0060's details annotation
1.Annotation
ICBR annotation: heat shock protein STI, putative, expressed
Blast result AT1G62740 : 0.00E+00
Blast annotation: stress-inducible protein, putative
2.Location
Scaffold: PH01005876
Strand: +
| Region | Start | End |
| gene | 26487 | 32586 |
| mRNA | 26487 | 32586 |
| exon | 26487 | 26588 |
| exon | 27658 | 28512 |
| exon | 29927 | 30215 |
| exon | 30374 | 30459 |
| exon | 31302 | 31525 |
| exon | 31617 | 31683 |
| exon | 31771 | 31830 |
| exon | 31936 | 32019 |
| exon | 32244 | 32586 |
| CDS | 26487 | 26588 |
| CDS | 27658 | 28512 |
| CDS | 29927 | 30215 |
| CDS | 30374 | 30459 |
| CDS | 31302 | 31525 |
| CDS | 31617 | 31683 |
| CDS | 31771 | 31830 |
| CDS | 31936 | 32019 |
| CDS | 32244 | 32309 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13432.5 | TPR_16 | 35 | 95 |
| PF13181.5 | TPR_8 | 98 | 131 |
| PF13414.5 | TPR_11 | 277 | 318 |
| PF13414.5 | TPR_11 | 416 | 457 |
| PF13181.5 | TPR_8 | 478 | 510 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.