PH01005939G0030's details annotation
1.Annotation
ICBR annotation: LSTK-1-like kinase, putative, expressed
Blast result AT3G04810 : 2.00E-124
Blast annotation: NIMA-related kinase 2
2.Location
Scaffold: PH01005939
Strand: -
| Region | Start | End |
| gene | 22927 | 29997 |
| mRNA | 22927 | 29997 |
| exon | 22927 | 24515 |
| exon | 25046 | 25354 |
| exon | 26015 | 26064 |
| exon | 26135 | 26234 |
| exon | 26582 | 26662 |
| exon | 26749 | 26794 |
| exon | 26889 | 26935 |
| exon | 27196 | 27333 |
| exon | 27532 | 27616 |
| exon | 27714 | 29997 |
| CDS | 23943 | 24515 |
| CDS | 25046 | 25354 |
| CDS | 26015 | 26064 |
| CDS | 26135 | 26234 |
| CDS | 26582 | 26662 |
| CDS | 26749 | 26794 |
| CDS | 26889 | 26935 |
| CDS | 27196 | 27333 |
| CDS | 27532 | 27616 |
| CDS | 27714 | 27799 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 4 | 161 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.