PH01006106G0030's details annotation
1.Annotation
ICBR annotation: PAPA-1-like conserved region family protein, expressed
Blast result AT2G47350 : 3.00E-41
Blast annotation: HIT zinc finger ;PAPA-1-like conserved region
2.Location
Scaffold: PH01006106
Strand: +
| Region | Start | End |
| gene | 9901 | 18390 |
| mRNA | 9901 | 18390 |
| exon | 9901 | 12087 |
| exon | 12496 | 13096 |
| exon | 13205 | 13305 |
| exon | 13392 | 13472 |
| exon | 13562 | 13966 |
| exon | 15543 | 15902 |
| exon | 17504 | 17878 |
| exon | 17920 | 18390 |
| CDS | 11578 | 12087 |
| CDS | 12496 | 13096 |
| CDS | 13205 | 13305 |
| CDS | 13392 | 13472 |
| CDS | 13562 | 13966 |
| CDS | 15543 | 15902 |
| CDS | 17504 | 17878 |
| CDS | 17920 | 18129 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000690 | protein methylation, HMG Transcription_Regulator(from iTAK) GRAS Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001426 | protein import into mitochondrial outer membrane, cell volume homeostasis, 'de novo' IMP biosynthetic process, mitochondrial outer membrane translocase complex, chloride transport, phosphoribosylformylglycinamidine cyclo-ligase activity, |
| coexpression network | CFinderM001431 | |
| coexpression network | CFinderM001462 | ATP-dependent peptidase activity, cellular process, Endocytosis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04795.11 | PAPA-1 | 380 | 461 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.