PH01006175G0030's details annotation
1.Annotation
ICBR annotation: choline transporter-related, putative, expressed
Blast result AT3G15380 : 0.00E+00
Blast annotation: Plasma-membrane choline transporter family protein
2.Location
Scaffold: PH01006175
Strand: -
| Region | Start | End |
| gene | 15687 | 20764 |
| mRNA | 15687 | 20764 |
| exon | 15687 | 16348 |
| exon | 16391 | 16618 |
| exon | 16933 | 17193 |
| exon | 17360 | 17716 |
| exon | 17899 | 18012 |
| exon | 18097 | 18170 |
| exon | 18258 | 18441 |
| exon | 18837 | 18982 |
| exon | 19084 | 19442 |
| exon | 20534 | 20764 |
| CDS | 16130 | 16348 |
| CDS | 16391 | 16618 |
| CDS | 16933 | 17193 |
| CDS | 17360 | 17716 |
| CDS | 17899 | 18012 |
| CDS | 18097 | 18170 |
| CDS | 18258 | 18441 |
| CDS | 18837 | 18982 |
| CDS | 19084 | 19442 |
| CDS | 20534 | 20724 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04515.11 | Choline_transpo | 329 | 643 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.