PH01006518G0030's details annotation
1.Annotation
ICBR annotation: zinc finger, C3HC4 type family protein, expressed
Blast result AT1G11020 : 3.00E-117
Blast annotation: RING/FYVE/PHD zinc finger superfamily protein
2.Location
Scaffold: PH01006518
Strand: -
| Region | Start | End |
| gene | 28885 | 34109 |
| mRNA | 28885 | 34109 |
| exon | 28885 | 29651 |
| exon | 29836 | 29959 |
| exon | 30368 | 30514 |
| exon | 31845 | 31930 |
| exon | 32723 | 34109 |
| CDS | 29359 | 29651 |
| CDS | 29836 | 29959 |
| CDS | 30368 | 30514 |
| CDS | 31845 | 31930 |
| CDS | 32723 | 32921 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12906.6 | RINGv | 56 | 106 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.