Annotation of co-expression genes

PH01006571G0030's details annotation

1.Annotation

ICBR annotation: phenylalanyl-tRNA synthetase, putative, expressed

Blast result AT4G39280 : 8.00E-126
Blast annotation: phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative

2.Location

Scaffold: PH01006571
Strand: -

RegionStartEnd
gene1346821279
mRNA1346821279
exon1346814939
exon1500615060
exon1535115476
exon1555215618
exon1655216648
exon1681016909
exon1697417058
exon1723417272
exon1735617393
exon1800018092
exon1818118236
exon1924819304
exon1960419702
exon1979519932
exon2001121279
CDS1488614939
CDS1500615060
CDS1535115476
CDS1555215618
CDS1655216648
CDS1681016909
CDS1697417058
CDS1723417272
CDS1735617393
CDS1800018092
CDS1818118236
CDS1924819304
CDS1960419702
CDS1979519932
CDS2001120181

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01409.19tRNA-synt_2d268326
PF01409.19tRNA-synt_2d327410

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Aminoacyl-tRNA biosynthesisphenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]ko00970K01889

10.Gene Ontology

GO AccessionGO Annotation
GO:0000049tRNA binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0005524ATP binding
GO:0005737cytoplasm
GO:0006418tRNA aminoacylation for protein translation
GO:0043039tRNA aminoacylation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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