PH01006649G0060's details annotation
1.Annotation
ICBR annotation: proline-rich protein HaeIII subfamily 1 precursor, putative, expressed
Blast result AT4G03120 : 3.10E-41
Blast annotation: C2H2 and C2HC zinc fingers superfamily protein
2.Location
Scaffold: PH01006649
Strand: +
| Region | Start | End |
| gene | 12539 | 16784 |
| mRNA | 12539 | 16784 |
| exon | 12539 | 12708 |
| exon | 13168 | 13210 |
| exon | 13982 | 14023 |
| exon | 14111 | 14381 |
| exon | 16171 | 16784 |
| CDS | 12701 | 12708 |
| CDS | 13168 | 13210 |
| CDS | 13982 | 14023 |
| CDS | 14111 | 14381 |
| CDS | 16171 | 16451 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06220.11 | zf-U1 | 1 | 38 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | U1 small nuclear ribonucleoprotein C | ko03041 | K11095 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000387 | spliceosomal snRNP assembly |
| GO:0000398 | mRNA splicing, via spliceosome |
| GO:0003676 | nucleic acid binding |
| GO:0005634 | nucleus |
| GO:0005685 | U1 snRNP |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.