PH01006652G0050's details annotation
1.Annotation
ICBR annotation: VHS and GAT domain containing protein, expressed
Blast result AT5G16880 : 3.00E-145
Blast annotation: Target of Myb protein 1
2.Location
Scaffold: PH01006652
Strand: -
| Region | Start | End |
| gene | 20265 | 27681 |
| mRNA | 20265 | 27681 |
| exon | 20265 | 20926 |
| exon | 21809 | 22054 |
| exon | 22675 | 23198 |
| exon | 25028 | 25141 |
| exon | 26082 | 26191 |
| exon | 27183 | 27681 |
| CDS | 20513 | 20926 |
| CDS | 21809 | 22054 |
| CDS | 22675 | 23198 |
| CDS | 25028 | 25141 |
| CDS | 26082 | 26191 |
| CDS | 27183 | 27493 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00790.18 | VHS | 226 | 359 |
| PF03127.13 | GAT | 415 | 489 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005622 | intracellular |
| GO:0006886 | intracellular protein transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.