PH01006816G0060's details annotation
1.Annotation
ICBR annotation: esterase, putative, expressed
Blast result AT2G23610 : 1.50E-49
Blast annotation: methyl esterase 3
2.Location
Scaffold: PH01006816
Strand: -
| Region | Start | End |
| gene | 22084 | 24407 |
| mRNA | 22084 | 24407 |
| exon | 22084 | 22927 |
| exon | 23703 | 23852 |
| exon | 23941 | 24407 |
| CDS | 22643 | 22927 |
| CDS | 23703 | 23852 |
| CDS | 23941 | 24321 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000477 | Valine,_leucine_and_isoleucine_degradation ZF-HD Transcription_Regulator(from PlantTFDB) Cyanoamino_acid_metabolism oxidoreductase activity, acting on the CH-CH group of donors, acyl-CoA dehydrogenase activity, Rab GTPase activator activity, Phenylpropanoid_biosynthesis regulation of Rab GTPase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12697.6 | Abhydrolase_6 | 11 | 261 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.