PH01006911G0040's details annotation
1.Annotation
ICBR annotation: SNF7 domain containing protein, putative, expressed
Blast result AT5G09260 : 3.10E-16
Blast annotation: vacuolar protein sorting-associated protein 20.2
2.Location
Scaffold: PH01006911
Strand: -
| Region | Start | End |
| gene | 29362 | 31617 |
| mRNA | 29362 | 31617 |
| exon | 29362 | 31130 |
| exon | 31223 | 31394 |
| exon | 31534 | 31617 |
| CDS | 31105 | 31130 |
| CDS | 31223 | 31394 |
| CDS | 31534 | 31617 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000290 | autophagy, Valine,_leucine_and_isoleucine_degradation Endocytosis |
| coexpression network | CFinderM000394 | Endocytosis Alanine,_aspartate_and_glutamate_metabolism IMP biosynthetic process, purine ribonucleotide biosynthetic process, phosphatidylcholine metabolic process, RLK-Pelle_RLCK-VI (from iTAK) Ether_lipid_metabolism |
| coexpression network | CFinderM000588 | lipid catabolic process, MYB Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.