Annotation of co-expression genes

PH01007143G0030's details annotation

1.Annotation

ICBR annotation: OsPDIL5-3 protein disulfide isomerase PDIL5-3, expressed

Blast result AT1G35620 : 1.00E-126
Blast annotation: PDI-like 5-2

2.Location

Scaffold: PH01007143
Strand: -

RegionStartEnd
gene1723221604
mRNA1723221604
exon1723217882
exon1848518792
exon1905119421
exon1951419617
exon1981219833
exon2004121604
CDS1764617882
CDS1848518792
CDS1905119421
CDS1951419617
CDS1981219833
CDS2004120333

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000900phosphopyruvate hydratase complex,
glycolysis,
phosphopyruvate hydratase activity,
Alanine,_aspartate_and_glutamate_metabolism
TKL-Pl-6 (from iTAK)
magnesium ion binding,
argininosuccinate synthase activity,
6-phosphofructokinase complex,
arginine biosynthetic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00085.19Thioredoxin48171
PF13848.5Thioredoxin_6223365

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Protein processing in endoplasmic reticulumprotein disulfide-isomerase A1 [EC:5.3.4.1]ko04141K09580

10.Gene Ontology

GO AccessionGO Annotation
GO:0006662glycerol ether metabolic process
GO:0009055electron carrier activity
GO:0015035protein disulfide oxidoreductase activity
GO:0045454cell redox homeostasis

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.