PH01007234G0010's details annotation
1.Annotation
ICBR annotation: 50S ribosomal protein L21, chloroplast precursor, putative, expressed
Blast result AT4G30930 : 4.90E-47
Blast annotation: Ribosomal protein L21
2.Location
Scaffold: PH01007234
Strand: +
| Region | Start | End |
| gene | 2418 | 5149 |
| mRNA | 2418 | 5149 |
| exon | 2418 | 2969 |
| exon | 3067 | 3147 |
| exon | 4055 | 4156 |
| exon | 4835 | 4909 |
| exon | 5025 | 5149 |
| CDS | 2565 | 2969 |
| CDS | 3067 | 3147 |
| CDS | 4055 | 4156 |
| CDS | 4835 | 4909 |
| CDS | 5025 | 5096 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00829.20 | Ribosomal_L21p | 131 | 231 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.