PH01007831G0010's details annotation
1.Annotation
ICBR annotation: prenylcysteine oxidase 1 precursor, putative, expressed
Blast result AT5G63910 : 1.00E-128
Blast annotation: farnesylcysteine lyase
2.Location
Scaffold: PH01007831
Strand: +
| Region | Start | End |
| gene | 12048 | 18759 |
| mRNA | 12048 | 18759 |
| exon | 12048 | 13256 |
| exon | 13873 | 14046 |
| exon | 16812 | 17171 |
| exon | 17355 | 17530 |
| exon | 17618 | 18759 |
| CDS | 12774 | 13256 |
| CDS | 13873 | 14046 |
| CDS | 16812 | 17171 |
| CDS | 17355 | 17530 |
| CDS | 17618 | 17897 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13450.5 | NAD_binding_8 | 22 | 93 |
| PF07156.13 | Prenylcys_lyase | 139 | 460 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Terpenoid backbone biosynthesis | prenylcysteine oxidase / farnesylcysteine lyase [EC:1.8.3.5] | ko00900 | K05906 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016670 | oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor |
| GO:0030328 | prenylcysteine catabolic process |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.