PH01007848G0020's details annotation
1.Annotation
ICBR annotation: 1,3-beta-glucan synthase component domain containing protein, expressed
Blast result AT2G31960 : 1.00E-116
Blast annotation: glucan synthase-like 3
2.Location
Scaffold: PH01007848
Strand: +
| Region | Start | End |
| gene | 6861 | 19148 |
| mRNA | 6861 | 19148 |
| exon | 6861 | 8371 |
| exon | 9472 | 9546 |
| exon | 9665 | 9715 |
| exon | 10593 | 10653 |
| exon | 11807 | 11856 |
| exon | 11938 | 12024 |
| exon | 12484 | 12587 |
| exon | 12672 | 12756 |
| exon | 12847 | 13013 |
| exon | 13091 | 13190 |
| exon | 13264 | 13361 |
| exon | 13893 | 13977 |
| exon | 14068 | 14228 |
| exon | 14305 | 14518 |
| exon | 15321 | 15472 |
| exon | 16741 | 16850 |
| exon | 16948 | 17073 |
| exon | 17352 | 17526 |
| exon | 18573 | 18717 |
| exon | 19020 | 19148 |
| CDS | 8369 | 8371 |
| CDS | 9472 | 9546 |
| CDS | 9665 | 9715 |
| CDS | 10593 | 10653 |
| CDS | 11807 | 11856 |
| CDS | 11938 | 12024 |
| CDS | 12484 | 12587 |
| CDS | 12672 | 12756 |
| CDS | 12847 | 13013 |
| CDS | 13091 | 13190 |
| CDS | 13264 | 13361 |
| CDS | 13893 | 13977 |
| CDS | 14068 | 14228 |
| CDS | 14305 | 14518 |
| CDS | 15321 | 15472 |
| CDS | 16741 | 16850 |
| CDS | 16948 | 17073 |
| CDS | 17352 | 17526 |
| CDS | 18573 | 18717 |
| CDS | 19020 | 19067 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02364.14 | Glucan_synthase | 464 | 555 |
| PF02364.14 | Glucan_synthase | 559 | 675 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000148 | 1,3-beta-D-glucan synthase complex |
| GO:0003843 | 1,3-beta-D-glucan synthase activity |
| GO:0006075 | (1->3)-beta-D-glucan biosynthetic process |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.