Annotation of co-expression genes

PH01008027G0010's details annotation

1.Annotation

ICBR annotation: serine/threonine protein kinase, putative, expressed

Blast result AT4G18950 : 8.00E-115
Blast annotation: Integrin-linked protein kinase family

2.Location

Scaffold: PH01008027
Strand: -

RegionStartEnd
gene2296969
mRNA2296969
exon2291964
exon26452756
exon29983119
exon33623423
exon35383656
exon39143993
exon46404723
exon48024855
exon52395403
exon54885571
exon58275922
exon60026076
exon62966969
CDS16951964
CDS26452756
CDS29983119
CDS33623423
CDS35383656
CDS39143993
CDS46404723
CDS48024855
CDS52395403
CDS54885571
CDS58275922
CDS60026076
CDS62966571

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF12796.6Ank_228116
PF07714.16Pkinase_Tyr192429

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.