PH01008407G0020's details annotation
1.Annotation
ICBR annotation: peptide chain release factor 2, putative, expressed
Blast result AT3G57190 : 5.80E-72
Blast annotation: peptide chain release factor, putative
2.Location
Scaffold: PH01008407
Strand: -
| Region | Start | End |
| gene | 7264 | 14589 |
| mRNA | 7264 | 14589 |
| exon | 7264 | 10333 |
| exon | 10416 | 10596 |
| exon | 12620 | 12832 |
| exon | 13949 | 14149 |
| exon | 14422 | 14589 |
| CDS | 10056 | 10333 |
| CDS | 10416 | 10596 |
| CDS | 12620 | 12832 |
| CDS | 13949 | 14149 |
| CDS | 14422 | 14589 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03462.17 | PCRF | 17 | 186 |
| PF00472.19 | RF-1 | 238 | 316 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003747 | translation release factor activity |
| GO:0005737 | cytoplasm |
| GO:0006415 | translational termination |
| GO:0016149 | translation release factor activity, codon specific |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.