Annotation of co-expression genes

PH01008767G0010's details annotation

1.Annotation

ICBR annotation: aspartic proteinase-like protein 2 precursor, putative, expressed

Blast result AT1G05840 : 6.00E-151
Blast annotation: Eukaryotic aspartyl protease family protein

2.Location

Scaffold: PH01008767
Strand: -

RegionStartEnd
gene275712197
mRNA275712197
exon27573283
exon35363607
exon36783753
exon67576847
exon70747144
exon72347341
exon82378501
exon1055410778
exon1137911626
exon1210212197
CDS31353283
CDS35363607
CDS36783753
CDS67576847
CDS70747144
CDS72347341
CDS82378501
CDS1055410778
CDS1137911626
CDS1210212197

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000745GMP synthase (glutamine-hydrolyzing) activity,
pyrophosphatase_activity
CMGC_GSK (from iTAK)
protein-arginine_deiminase_activity

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF14543.5TAXi_N80264
PF14541.5TAXi_C281433

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004190aspartic-type endopeptidase activity
GO:0006508proteolysis

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.