PH01016294G0010's details annotation
1.Annotation
ICBR annotation: C4-dicarboxylate transporter/malic acid transport protein, expressed
Blast result AT5G24030 : 2.00E-139
Blast annotation: SLAC1 homologue 3
2.Location
Scaffold: PH01016294
Strand: -
| Region | Start | End |
| gene | 29 | 1820 |
| mRNA | 29 | 1820 |
| exon | 29 | 846 |
| exon | 968 | 1528 |
| exon | 1625 | 1820 |
| CDS | 29 | 846 |
| CDS | 968 | 1528 |
| CDS | 1625 | 1780 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03595.16 | SLAC1 | 258 | 498 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.