PH01016501G0010's details annotation
1.Annotation
ICBR annotation: ribulose bisphosphate carboxylase large chain precursor, putative, expressed
Blast result ATCG00490 : 3.00E-165
Blast annotation: ribulose-bisphosphate carboxylases
2.Location
Scaffold: PH01016501
Strand: +
| Region | Start | End |
| gene | 906 | 2116 |
| mRNA | 906 | 2116 |
| exon | 906 | 1658 |
| exon | 1829 | 2116 |
| CDS | 906 | 1658 |
| CDS | 1829 | 2034 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02788.15 | RuBisCO_large_N | 1 | 62 |
| PF00016.19 | RuBisCO_large | 72 | 249 |
| PF00016.19 | RuBisCO_large | 251 | 310 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000287 | magnesium ion binding |
| GO:0015977 | carbon fixation |
| GO:0016984 | ribulose-bisphosphate carboxylase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.