Annotation of co-expression genes

PH01027571G0010's details annotation

1.Annotation

ICBR annotation: lactate/malate dehydrogenase, putative, expressed

Blast result AT3G47520 : 1.00E-151
Blast annotation: malate dehydrogenase

2.Location

Scaffold: PH01027571
Strand: -

RegionStartEnd
gene12092233
mRNA12092233
exon12092233
CDS12472233

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00056.22Ldh_1_N7150
PF02866.17Ldh_1_C152317

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Citrate cycle (TCA cycle)malate dehydrogenase [EC:1.1.1.37]ko00020K00026
Pyruvate metabolismmalate dehydrogenase [EC:1.1.1.37]ko00620K00026
Glyoxylate and dicarboxylate metabolismmalate dehydrogenase [EC:1.1.1.37]ko00630K00026
Carbon fixation in photosynthetic organismsmalate dehydrogenase [EC:1.1.1.37]ko00710K00026

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0005975carbohydrate metabolic process
GO:0006108malate metabolic process
GO:0016491oxidoreductase activity
GO:0016615malate dehydrogenase activity
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0030060L-malate dehydrogenase activity
GO:0044262cellular carbohydrate metabolic process
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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