PH01087563G0010's details annotation
1.Annotation
ICBR annotation: PPR repeat domain containing protein, putative, expressed
Blast result AT1G74850 : 3.40E-94
Blast annotation: plastid transcriptionally active 2
2.Location
Scaffold: PH01087563
Strand: -
| Region | Start | End |
| gene | 181 | 1143 |
| mRNA | 181 | 1143 |
| exon | 181 | 1143 |
| CDS | 181 | 1143 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000761 | tRNA aminoacylation for protein translation, |
| coexpression network | CFinderM000937 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF17177.3 | PPR_long | 29 | 206 |
| PF13041.5 | PPR_2 | 232 | 278 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.