PH01146594G0010's details annotation
1.Annotation
ICBR annotation: signal recognition particle 54 kDa protein, putative, expressed
Blast result AT1G48900 : 7.00E-44
Blast annotation: Signal recognition particle, SRP54 subunit protein
2.Location
Scaffold: PH01146594
Strand: +
| Region | Start | End |
| gene | 40 | 919 |
| mRNA | 40 | 919 |
| exon | 40 | 270 |
| exon | 390 | 919 |
| CDS | 40 | 270 |
| CDS | 390 | 494 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02881.18 | SRP54_N | 6 | 83 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005525 | GTP binding |
| GO:0006614 | SRP-dependent cotranslational protein targeting to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.