PH01277904G0010's details annotation
1.Annotation
ICBR annotation: splicing factor 3A subunit 2, putative, expressed
Blast result AT2G32600 : 2.00E-46
Blast annotation: hydroxyproline-rich glycoprotein family protein
2.Location
Scaffold: PH01277904
Strand: +
| Region | Start | End |
| gene | 63 | 489 |
| mRNA | 63 | 489 |
| exon | 63 | 214 |
| exon | 320 | 489 |
| CDS | 63 | 214 |
| CDS | 320 | 489 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12874.6 | zf-met | 52 | 76 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0005634 | nucleus |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.