|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Endocytosis | 0.018055548 | KEGG | | vesicle docking involved in exocytosis, | 0.024976176 | GO:0006904 | | RLK-Pelle_LRR-XI-1 (from iTAK) | 0.03986464 | GFam | | WRKY Transcription_Regulator(from PlantTFDB) | 0.03986464 | GFam |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000117G0680 | Nodulin MtN3 family protein | AT5G50790 (2.50E-59) | | PH01000218G0100 | WRKY family transcription factor | AT2G44745 (4.80E-51) | | PH01000470G0700 | vacuolar protein sorting 45 | AT1G77140 (0.00E+00) | | PH01000699G0200 | FASCICLIN-like arabinogalactan 1 | AT5G55730 (3.90E-37) | | PH01000981G0060 | Leucine-rich receptor-like protein kinase family protein | AT3G49670 (0) | | PH01002267G0030 | Protein of Unknown Function (DUF239) | AT5G50150 (1.00E-125) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000027 | Butanoate_metabolism
Citrate_cycle_(TCA_cycle)
Pyruvate_metabolism
Glycolysis_/_Gluconeogenesis
intracellular membrane-bounded organelle,
pyruvate dehydrogenase (acetyl-transferring) activity,
oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor,
vesicle docking involved in exocytosis,
Endocytosis
| details | | CFinderM000045 | RLK-Pelle_LRR-VII-1 (from iTAK)
| details | | CFinderM000049 | vesicle docking involved in exocytosis,
Endocytosis
ubiquitin thiolesterase activity,
| details | | CFinderM000071 | Endocytosis
vesicle docking involved in exocytosis,
| details | | CFinderM000074 | Ribosome
translation,
structural constituent of ribosome,
intracellular,
| details | | CFinderM000089 | RLK-Pelle_LRR-VII-1 (from iTAK)
RLK-Pelle_LRR-XI-1 (from iTAK)
protein phosphorylation,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
ATP binding,
vesicle docking involved in exocytosis,
Endocytosis
vesicle-mediated transport,
protein serine/threonine kinase activity,
protein binding,
| details | | CFinderM000096 | NF-X1 Transcription_Regulator(from PlantTFDB)
RLK-Pelle_LRR-Xa (from iTAK)
Endocytosis
GATA Transcription_Regulator(from PlantTFDB)
C2C2-GATA Transcription_Regulator(from iTAK)
GRAS Transcription_Regulator(from PlantTFDB)
vesicle docking involved in exocytosis,
| details | | CFinderM000138 | RLK-Pelle_LRR-Xa (from iTAK)
GRAS Transcription_Regulator(from PlantTFDB)
vesicle docking involved in exocytosis,
| details | | CFinderM000141 | Other_glycan_degradation
alpha-L-fucosidase activity,
vesicle docking involved in exocytosis,
carbohydrate metabolic process,
Endocytosis
| details | | CFinderM000147 | mitochondrial inner membrane presequence translocase complex,
P-P-bond-hydrolysis-driven protein transmembrane transporter activity,
GRAS Transcription_Regulator(from PlantTFDB)
Endocytosis
vesicle docking involved in exocytosis,
| details | | CFinderM000165 | oxidoreductase activity, acting on CH-OH group of donors,
flavin adenine dinucleotide binding,
oxidation-reduction process,
vesicle docking involved in exocytosis,
Valine,_leucine_and_isoleucine_degradation
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor,
Histidine_metabolism
Limonene_and_pinene_degradation
Propanoate_metabolism
Tryptophan_metabolism
Lysine_degradation
Chloroalkane_and_chloroalkene_degradation
beta-Alanine_metabolism
Fatty_acid_metabolism
Glycerolipid_metabolism
Ascorbate_and_aldarate_metabolism
Pentose_and_glucuronate_interconversions
| details | | CFinderM000167 | riboflavin synthase activity,
Riboflavin_metabolism
vesicle docking involved in exocytosis,
riboflavin biosynthetic process,
| details | | CFinderM000198 | arginine decarboxylase activity,
vesicle docking involved in exocytosis,
spermidine biosynthetic process,
arginine catabolic process,
Endocytosis
RNA_degradation
| details | | CFinderM000208 | Endocytosis
vesicle docking involved in exocytosis,
GATA Transcription_Regulator(from PlantTFDB)
TALE Transcription_Regulator(from PlantTFDB)
HB-BELL Transcription_Regulator(from iTAK)
C2C2-GATA Transcription_Regulator(from iTAK)
RLK-Pelle_L-LEC (from iTAK)
GRAS Transcription_Regulator(from PlantTFDB)
| details | | CFinderM000276 | C2C2-Dof Transcription_Regulator(from iTAK)
Dof Transcription_Regulator(from PlantTFDB)
Endocytosis
RLK-Pelle_LRR-III (from iTAK)
vesicle docking involved in exocytosis,
| details | | CFinderM000292 | Basal_transcription_factors
nucleus,
HSF Transcription_Regulator(from PlantTFDB)
vesicle docking involved in exocytosis,
Endocytosis
| details | | CFinderM000322 | Endocytosis
protein refolding,
vesicle docking involved in exocytosis,
nucleus,
| details | | CFinderM000417 | Spliceosome
nucleotide binding,
nucleic acid binding,
vesicle docking involved in exocytosis,
Endocytosis
vesicle-mediated transport,
| details | | CFinderM000423 | Endocytosis
proteolysis,
vesicle docking involved in exocytosis,
| details | | CFinderM000440 | Endocytosis
cell wall,
apoplast,
xyloglucan:xyloglucosyl transferase activity,
cellular glucan metabolic process,
vesicle docking involved in exocytosis,
serine-type carboxypeptidase activity,
| details | | CFinderM000476 | Oxidative_phosphorylation
mitochondrial envelope,
mitochondrial_respiratory_chain_complex_III
vesicle docking involved in exocytosis,
mitochondrial electron transport, ubiquinol to cytochrome c,
ATPase activity, coupled to transmembrane movement of substances,
ubiquitin thiolesterase activity,
Endocytosis
Phagosome
| details | | CFinderM000491 | intracellular,
GDP-mannose metabolic process,
ubiquitin-dependent protein catabolic process,
intracellular transport,
GDP-mannose 4,6-dehydratase activity,
Ribosome
translation,
vesicle docking involved in exocytosis,
proteasome core complex, alpha-subunit complex,
proteasome core complex,
large ribosomal subunit,
Ribosome
proteolysis involved in cellular protein catabolic process,
structural constituent of ribosome,
endopeptidase activity,
threonine-type endopeptidase activity,
| details | | CFinderM000657 | vesicle docking involved in exocytosis,
Oxidative_phosphorylation
Endocytosis
nucleosome,
vesicle-mediated transport,
nucleosome assembly,
| details | | CFinderM000867 | protein complex,
mediator complex,
RNA_polymerase_II_transcription_cofactor_activity
protein polymerization,
regulation of transcription from RNA polymerase II promoter,
vesicle docking involved in exocytosis,
vesicle-mediated transport,
GTP_catabolic_process
| details | | CFinderM001023 | vesicle docking involved in exocytosis,
vesicle-mediated transport,
| details | | CFinderM001185 | NF-YC Transcription_Regulator(from PlantTFDB)
mediator complex,
CCAAT-binding factor complex,
GATA Transcription_Regulator(from PlantTFDB)
C2C2-GATA Transcription_Regulator(from iTAK)
Endocytosis
RNA_polymerase_II_transcription_cofactor_activity
sequence-specific DNA binding,
sequence-specific DNA binding transcription factor activity,
vesicle docking involved in exocytosis,
regulation of transcription from RNA polymerase II promoter,
regulation of transcription, DNA-dependent,
vesicle-mediated transport,
protein_heterodimerization_activity
| details |
4.Expression profilings |
