CFinderM000343's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000118G1620damaged DNA binding;DNA-directed DNA polymerasesAT4G31400 (1.50E-57)
PH01000191G0770cell division cycle protein 48-related / CDC48-relatedAT1G05910 (0.00E+00)
PH01000489G0310THO2AT1G24706 (0.00E+00)
PH01000541G0730Ras-related small GTP-binding family proteinAT2G47170 (2.00E-100)
PH01001490G0300acyl carrier protein 2AT1G54580 (8.60E-29)
PH01003703G0180DNA-binding bromodomain-containing proteinAT1G58025 (1.20E-52)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000041Oxidative_phosphorylation
respiratory electron transport chain,
mitochondrial inner membrane,
details
CFinderM000382ribulose-phosphate 3-epimerase activity,
racemase and epimerase activity, acting on carbohydrates and derivatives,
endoplasmic reticulum,
pentose-phosphate shunt,
details
CFinderM000534CMGC_GSK (from iTAK)
transcription factor TFIID complex,
intracellular,
Basal_transcription_factors
Phagosome
details
CFinderM000946SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
histone modification,
C3H Transcription_Regulator(from PlantTFDB)
actin cytoskeleton organization,
transcription initiation, DNA-dependent,
mitochondrial respiratory chain,
sister_chromatid_cohesion
chromosome condensation,
CMGC_MAPK (from iTAK)
actin binding,
chromosome organization,
ribulose-phosphate 3-epimerase activity,
details
CFinderM001147SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
Alfin-like Transcription_Regulator(from iTAK)
nucleotidyltransferase activity,
TORC1_complex
mediator complex,
phospholipid metabolic process,
TOR_signaling
phospholipase A2 activity,
lipid catabolic process,
methylation,
Linoleic_acid_metabolism
Arachidonic_acid_metabolism
Ether_lipid_metabolism
alpha-Linolenic_acid_metabolism
details
CFinderM001352RNA_transport
rRNA_catabolic_process
details

4.Expression profilings