|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | C2H2 Transcription_Regulator(from PlantTFDB) | 0.000780352 | GFam | | Peroxisome | 0.003994066 | KEGG | | Mismatch_repair | 0.027447194 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000005G3140 | RNA helicase, ATP-dependent, SK12/DOB1 protein | AT1G59760 (0.00E+00) | | PH01000031G1420 | relative of early flowering 6 | AT3G48430 (2.70E-56) | | PH01000055G1690 | nuclear RNA polymerase D2A | AT3G23780 (0.00E+00) | | PH01000087G0110 | Protein kinase superfamily protein | AT3G09010 (8.00E-109) | | PH01000229G0090 | relative of early flowering 6 | AT3G48430 (4.00E-105) | | PH01000551G0790 | Putative endonuclease or glycosyl hydrolase | AT5G09840 (2.50E-86) | | PH01002785G0080 | cleavage and polyadenylation specificity factor 73-I | AT1G61010 (0.00E+00) | | PH01002923G0150 | MUTS homolog 2 | AT3G18524 (0.00E+00) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000568 | nuclear chromosome,
Mismatch_repair
Mismatch_repair
mRNA_surveillance_pathway
| details | | CFinderM000940 | nucleic acid binding,
Ribosome_biogenesis_in_eukaryotes
| details | | CFinderM001166 | DNA_replication
Nucleotide_excision_repair
Mismatch_repair
Riboflavin_metabolism
histone acetylation,
chromatin modification,
chromatin silencing at telomere,
| details | | CFinderM001205 | ribonucleoside_binding
transcription, DNA-dependent,
DNA-directed RNA polymerase activity,
Drug_metabolism_-_cytochrome_P450
Metabolism_of_xenobiotics_by_cytochrome_P450
Glutathione_metabolism
| details | | CFinderM001427 | outer membrane,
RLK-Pelle_DLSV (from iTAK)
Protein_processing_in_endoplasmic_reticulum
| details | | CFinderM001440 | Mismatch_repair
nucleotide-excision repair,
Mismatch_repair
nuclear pore,
nucleobase-containing compound metabolic process,
| details | | CFinderM001465 | cellular_homeostasis
mitochondrial outer membrane,
Peroxisome
RNA methylation,
Mismatch_repair
Mismatch_repair
C2H2 Transcription_Regulator(from PlantTFDB)
RNA_degradation
mismatched DNA binding,
O-methyltransferase activity,
hydrolase_activity,_acting_on_acid_anhydrides
RNA methyltransferase activity,
| details | | CFinderM001582 | cellular_homeostasis
Peroxisome
mitochondrial outer membrane,
protein methylation,
| details |
4.Expression profilings |
