CFinderM000823's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
ABC_transporters0.007011065KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000000G6760SPT2 chromatin proteinAT2G22720 (3.70E-30)
PH01000033G1580Transducin/WD40 repeat-like superfamily proteinAT3G45620 (2.00E-147)
PH01000180G1130nucleoporin-relatedAT5G20200 (5.50E-11)
PH01000180G1240TPX2 (targeting protein for Xklp2) protein familyAT4G32330 (3.40E-30)
PH01000384G0290DNA-binding bromodomain-containing proteinAT5G46550 (4.80E-34)
PH01000384G0310-- (-)
PH01000561G0670DNA-binding bromodomain-containing proteinAT5G46550 (1.50E-33)
PH01000888G0040ABC transporter family proteinAT3G28345 (6.00E-169)
PH01001620G0210-- (-)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000273Lysine_biosynthesis
L,L-diaminopimelate_aminotransferase_activity
lysine biosynthetic process via diaminopimelate,
RLK-Pelle_LRR-Xb-1 (from iTAK)
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
details
CFinderM000402spliceosomal complex,
nuclear mRNA splicing, via spliceosome,
GRAS Transcription_Regulator(from PlantTFDB)
protein binding,
Spliceosome
details
CFinderM000486details
CFinderM000496cullin-RING ubiquitin ligase complex,
ubiquitin protein ligase binding,
Pseudo ARR-B Transcription_Regulator(from iTAK)
ubiquitin-dependent protein catabolic process,
diphosphomevalonate decarboxylase activity,
L,L-diaminopimelate_aminotransferase_activity
Citrate_cycle_(TCA_cycle)
Pyruvate_metabolism
details
CFinderM000822protein binding,
Proteasome
details
CFinderM001144cullin-RING ubiquitin ligase complex,
details

4.Expression profilings


Show details about module gene expression profiling