CFinderM000913's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Ribosome0.003923263KEGG
translation,0.006295177GO:0006412
Ribosome0.010277156KEGG
intracellular,0.013416886GO:0005622
cullin-RING ubiquitin ligase complex,0.013416886GO:0031461
structural constituent of ribosome,0.017486604GO:0003735
ubiquitin protein ligase binding,0.021055543GO:0031625
MYB_related Transcription_Regulator(from PlantTFDB)0.023755064GFam
MYB-related Transcription_Regulator(from iTAK)0.023755064GFam
ubiquitin-dependent protein catabolic process,0.037857009GO:0006511
Ubiquitin_mediated_proteolysis0.037857009KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000055G1960cullin 3BAT1G69670 (0.00E+00)
PH01000383G0550Ribosomal protein L34e superfamily proteinAT1G26880 (1.20E-43)
PH01000421G0730Ribosomal L29e protein familyAT3G06700 (2.70E-23)
PH01000496G0690-AT1G15420 (3.20E-17)
PH01000982G0620chromatin remodeling 4AT5G44800 (1.60E-68)
PH01001516G0020Duplicated homeodomain-like superfamily proteinAT3G52250 (2.80E-95)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000117nuclear chromosome,
Glycolysis_/_Gluconeogenesis
Ino80_complex
ATP citrate synthase activity,
phosphoglycerate kinase activity,
succinate-CoA ligase (ADP-forming) activity,
details
CFinderM000911intracellular,
Ribosome
translation,
PHD Transcription_Regulator(from iTAK)
structural constituent of ribosome,
protein import into nucleus,
details
CFinderM000912intracellular,
SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
Ribosome
translation,
cellular protein modification process,
structural constituent of ribosome,
Ubiquitin_mediated_proteolysis
details
CFinderM000960Ubiquitin_mediated_proteolysis
anaphase-promoting complex,
cullin-RING ubiquitin ligase complex,
details
CFinderM000973STE_STE11 (from iTAK)
protein import into nucleus,
RNA_degradation
phospholipid transport,
details
CFinderM001083MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
Pseudo ARR-B Transcription_Regulator(from iTAK)
protein import into mitochondrial inner membrane,
transcription, DNA-dependent,
nucleus,
IWS1 Transcription_Regulator(from iTAK)
GNAT Transcription_Regulator(from iTAK)
details
CFinderM001835MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
nuclear chromosome,
chromatin binding,
details
CFinderM001866sterol metabolic process,
Steroid_biosynthesis
cholestenol delta-isomerase activity,
protein catabolic process,
MYB_related Transcription_Regulator(from PlantTFDB)
C3H Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
details

4.Expression profilings