|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | TKL-Pl-6 (from iTAK) | 0.003059343 | GFam | | Ubiquitin_mediated_proteolysis | 0.029381521 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000311G0400 | - | AT3G17740 (7.00E-180) | | PH01000441G0690 | D111/G-patch domain-containing protein | AT4G34140 (1.00E-56) | | PH01002059G0180 | Glutaredoxin family protein | AT5G20500 (4.20E-41) | | PH01002177G0070 | ubiquitin-conjugating enzyme 35 | AT1G78870 (3.40E-58) | | PH01002859G0100 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain | AT5G57610 (0.00E+00) | | PH01003571G0130 | NB-ARC domain-containing disease resistance protein | AT3G14470 (1.00E-105) | | PH01003792G0020 | Pentatricopeptide repeat (PPR) superfamily protein | AT2G26790 (2.00E-102) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000495 | SNF2 Transcription_Regulator(from iTAK)
proteasomal ubiquitin-dependent protein catabolic process,
nucleotide-excision repair,
ribosome biogenesis,
eukaryotic translation initiation factor 3 complex,
nucleolus,
helicase activity,
| details | | CFinderM000945 | Protein_processing_in_endoplasmic_reticulum
| details | | CFinderM001272 | | details | | CFinderM001291 | ubiquitin-dependent protein catabolic process,
| details | | CFinderM001457 | mRNA_surveillance_pathway
Diterpenoid_biosynthesis
CAMTA Transcription_Regulator(from PlantTFDB)
protein binding,
mechanically-gated_ion_channel_activity
| details | | CFinderM001554 | protein retention in ER lumen,
ER retention sequence binding,
peptidyl-prolyl cis-trans isomerase activity,
acid-amino acid ligase activity,
| details | | CFinderM001555 | protein retention in ER lumen,
RLK-Pelle_DLSV (from iTAK)
ER retention sequence binding,
| details | | CFinderM001602 | SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
histone modification,
C3H Transcription_Regulator(from PlantTFDB)
mRNA_surveillance_pathway
transcription initiation, DNA-dependent,
| details | | CFinderM001678 | mRNA_cleavage_and_polyadenylation_specificity_factor_complex
mRNA cleavage,
protein retention in ER lumen,
mRNA_polyadenylation
RNA metabolic process,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
ER retention sequence binding,
| details | | CFinderM001741 | protein folding,
Nucleotide_excision_repair
mRNA_surveillance_pathway
Ubiquitin_mediated_proteolysis
peptidyl-prolyl cis-trans isomerase activity,
nucleic acid binding,
| details | | CFinderM001819 | SNF2 Transcription_Regulator(from iTAK)
cis-Golgi network,
mRNA_surveillance_pathway
| details |
4.Expression profilings |
