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1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | clathrin coat of trans-Golgi network vesicle, | 3.62E-06 | GO:0030130 | | clathrin coat of coated pit, | 3.62E-06 | GO:0030132 | | structural molecule activity, | 0.000459581 | GO:0005198 | | vesicle-mediated transport, | 0.001613761 | GO:0016192 | | mitochondrial_respiratory_chain_complex_III | 0.002405648 | GO:0005750 | | intracellular protein transport, | 0.003606097 | GO:0006886 | | mitochondrial electron transport, ubiquinol to cytochrome c, | 0.004165299 | GO:0006122 | | negative regulation of catalytic activity, | 0.017133595 | GO:0043086 | | identical protein binding, | 0.034267191 | GO:0042802 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000064G1200 | SAP domain-containing protein | AT4G39680 (6.50E-83) | | PH01000087G0120 | Clathrin light chain protein | AT2G40060 (6.80E-43) | | PH01000488G0670 | Uncharacterised protein family (UPF0172) | AT5G55940 (3.20E-39) | | PH01000901G0390 | Clathrin light chain protein | AT2G20760 (4.10E-34) | | PH01002211G0190 | Cytochrome bd ubiquinol oxidase, 14kDa subunit | AT4G32470 (2.30E-40) | | PH01003889G0070 | Proteinase inhibitor, propeptide | AT1G71950 (1.20E-30) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000084 | cell wall macromolecule catabolic process,
chitin catabolic process,
WRKY Transcription_Regulator(from PlantTFDB)
defense response to fungus,
ammonium_transport
ammonium_transmembrane_transport
defense response to bacterium,
metabolic process,
chitinase activity,
| details | | CFinderM000188 | ubiquitin-dependent protein catabolic process,
| details | | CFinderM000514 | cell redox homeostasis,
protein disulfide oxidoreductase activity,
nitrogen compound metabolic process,
electron carrier activity,
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds,
| details | | CFinderM000516 | oligopeptide transport,
nitrogen compound metabolic process,
| details | | CFinderM000914 | tetrapyrrole biosynthetic process,
glutamate-1-semialdehyde 2,1-aminomutase activity,
ubiquitin-dependent protein catabolic process,
| details | | CFinderM001208 | TRAF Transcription_Regulator(from iTAK)
negative regulation of catalytic activity,
identical protein binding,
| details | | CFinderM001335 | clathrin coat of trans-Golgi network vesicle,
clathrin coat of coated pit,
Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
WRKY Transcription_Regulator(from PlantTFDB)
Phagosome
| details | | CFinderM001342 | | details | | CFinderM001590 | protein processing,
peroxiredoxin activity,
antioxidant activity,
integral to membrane,
Biosynthesis_of_unsaturated_fatty_acids
Fatty_acid_elongation
oxidoreductase activity, acting on the CH-CH group of donors,
double-stranded RNA binding,
ribonuclease III activity,
| details | | CFinderM001676 | Spliceosome
| details | | CFinderM001815 | | details |
4.Expression profilings |
