CFinderM001247's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
CAMTA Transcription_Regulator(from PlantTFDB)0.014044931GFam
superoxide metabolic process,0.015453287GO:0006801
Peroxisome0.03218143KEGG
Protein_export0.03218143KEGG
superoxide dismutase activity,0.040806878GO:0004784

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000010G2480Peptidase S24/S26A/S26B/S26C family proteinAT3G08980 (6.50E-29)
PH01000044G1520pentatricopeptide (PPR) repeat-containing proteinAT5G04810 (2.00E-164)
PH01000064G0630signal responsive 1AT2G22300 (1.80E-70)
PH01000240G0440Cytochrome b561/ferric reductase transmembrane with DOMON related domainAT3G61750 (1.50E-88)
PH01001057G0400transcription factor IIIAAT1G72050 (4.00E-103)
PH01001116G0330Tetratricopeptide repeat (TPR)-like superfamily proteinAT5G67570 (1.70E-88)
PH01001452G0340bindingAT2G06210 (2.00E-103)
PH01002962G0030manganese superoxide dismutase 1AT3G10920 (1.00E-101)
PH01003768G0060-- (-)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000237solute:hydrogen antiporter activity,
details
CFinderM000592transcription, DNA-dependent,
cytoplasm,
details
CFinderM000637guanosine tetraphosphate metabolic process,
carotenoid biosynthetic process,
Carotenoid_biosynthesis
Purine_metabolism
details
CFinderM000837glutamyl-tRNA aminoacylation,
guanosine tetraphosphate metabolic process,
tRNA aminoacylation,
Aminoacyl-tRNA_biosynthesis
Porphyrin_and_chlorophyll_metabolism
glutamate-tRNA ligase activity,
ligase activity, forming aminoacyl-tRNA and related compounds,
tRNA binding,
tRNA aminoacylation for protein translation,
details
CFinderM001246proteolysis,
Protein_export
C2H2 Transcription_Regulator(from PlantTFDB)
serine-type peptidase activity,
cysteine-type endopeptidase activity,
details
CFinderM001320CMGC_CDK-PITSLRE (from iTAK)
CAMTA Transcription_Regulator(from PlantTFDB)
details
CFinderM001395bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001447superoxide metabolic process,
superoxide dismutase activity,
Peroxisome
details
CFinderM001460nucleus,
CAMTA Transcription_Regulator(from PlantTFDB)
Nitrogen_metabolism
Oxidative_phosphorylation
bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001513Glycine,_serine_and_threonine_metabolism
GH17 Glycoside_Hydrolases
L-serine biosynthetic process,
phosphoglycerate dehydrogenase activity,
Methane_metabolism
cofactor binding,
details
CFinderM001520SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
Glycine,_serine_and_threonine_metabolism
L-serine biosynthetic process,
RNA metabolic process,
Methane_metabolism
phosphoglycerate dehydrogenase activity,
glycopeptide_alpha-N-acetylgalactosaminidase_activity
details
CFinderM001595dephosphorylation,
Butanoate_metabolism
Citrate_cycle_(TCA_cycle)
Pyruvate_metabolism
details
CFinderM001806PHD Transcription_Regulator(from iTAK)
Nitrogen_metabolism
Oxidative_phosphorylation
details

4.Expression profilings


Show details about module gene expression profiling