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1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | GT77 GlycosylTransferases | 0.002186065 | GFam | | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis | 0.002406476 | KEGG | | succinate-CoA ligase (ADP-forming) activity, | 0.012218892 | GO:0004775 | | ATP citrate synthase activity, | 0.012218892 | GO:0003878 | | Carbon_fixation_pathways_in_prokaryotes | 0.016804313 | KEGG | | transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, | 0.019000037 | GO:0046912 | | prephenate dehydratase activity, | 0.020351457 | GO:0004664 | | Citrate_cycle_(TCA_cycle) | 0.021950026 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000056G1870 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | AT5G47820 (0.00E+00) | | PH01000073G0310 | Nucleotide-diphospho-sugar transferase family protein | AT1G19360 (5.00E-154) | | PH01000271G0580 | IQ-domain 31 | AT1G74690 (2.90E-76) | | PH01000713G0340 | ATP citrate lyase subunit B 2 | AT5G49460 (0.00E+00) | | PH01001010G0030 | arogenate dehydratase 2 | AT3G07630 (3.00E-108) | | PH01002230G0270 | RNA binding;abscisic acid binding | AT4G16280 (5.10E-90) | | PH01002608G0210 | RAB GTPase homolog A2C | AT3G46830 (8.80E-87) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000013 | cellulose biosynthetic process,
cellulose synthase (UDP-forming) activity,
response to oxidative stress,
extracellular polysaccharide biosynthetic process,
hydrolase activity, hydrolyzing O-glycosyl compounds,
carbohydrate metabolic process,
| details | | CFinderM000372 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
L-phenylalanine biosynthetic process,
regulation of ARF GTPase activity,
Endocytosis
| details | | CFinderM000783 | carbohydrate metabolic process,
CE13 Carbohydrate_Esterases
hydrolase activity, hydrolyzing O-glycosyl compounds,
| details | | CFinderM001027 | RLK-Pelle_SD-2b (from iTAK)
Phenylalanine_metabolism
Phenylpropanoid_biosynthesis
Methane_metabolism
| details | | CFinderM001037 | RLK-Pelle_LRR-VI-1 (from iTAK)
microtubule associated complex,
regulation of ARF protein signal transduction,
| details | | CFinderM001073 | | details | | CFinderM001114 | MYB Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001135 | | details | | CFinderM001136 | regulation of ARF protein signal transduction,
DNA integration,
ARF guanyl-nucleotide exchange factor activity,
| details | | CFinderM001196 | nitronate monooxygenase activity,
intramolecular transferase activity,
| details | | CFinderM001456 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
L-phenylalanine biosynthetic process,
microtubule associated complex,
microtubule-based movement,
prephenate dehydratase activity,
| details | | CFinderM001475 | cellulose biosynthetic process,
intramolecular transferase activity,
| details | | CFinderM001697 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
L-phenylalanine biosynthetic process,
cellular carbohydrate metabolic process,
peptide-methionine-(S)-S-oxide reductase activity,
prephenate dehydratase activity,
transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer,
Carbon_fixation_pathways_in_prokaryotes
cofactor binding,
Citrate_cycle_(TCA_cycle)
| details | | CFinderM001784 | RLK-Pelle_RLCK-V (from iTAK)
COPI vesicle coat,
membrane coat,
Spliceosome
| details |
4.Expression profilings |
