CFinderM001367's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
histone deacetylation,0.007028393GO:0016575
protein import into nucleus,0.007028393GO:0006606
RLK-Pelle_RLCK-VIIa-2 (from iTAK)0.011386496GFam
histone deacetylase activity,0.038178537GO:0004407

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000219G0530protein kinase 2BAT2G02800 (1.00E-107)
PH01000285G0860histone deacetylase 6AT5G63110 (0.00E+00)
PH01000583G0440-- (-)
PH01000632G0380importin alpha isoform 2AT4G16143 (0.00E+00)
PH01000773G0320Remorin family proteinAT2G02170 (1.80E-99)
PH01000801G0160Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domainAT5G43960 (1.60E-42)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000204CMGC_CLK (from iTAK)
histone deacetylation,
ubiquitin ligase complex,
histone deacetylase activity,
details
CFinderM000341exosome_(RNase_complex)
COP9_signalosome
details
CFinderM000691ornithine carbamoyltransferase activity,
phosphoribosyl-AMP cyclohydrolase activity,
ornithine_metabolic_process
carboxyl- or carbamoyltransferase activity,
histone deacetylase activity,
histone deacetylation,
Histidine_metabolism
histidine biosynthetic process,
Arginine_and_proline_metabolism
cellular amino acid metabolic process,
cellular protein metabolic process,
amino acid binding,
details
CFinderM000692CMGC_CLK (from iTAK)
ornithine_metabolic_process
histone deacetylation,
ornithine carbamoyltransferase activity,
carboxyl- or carbamoyltransferase activity,
histone deacetylase activity,
Arginine_and_proline_metabolism
cellular amino acid metabolic process,
details
CFinderM000693ornithine_metabolic_process
histone deacetylation,
protein import into nucleus,
ornithine carbamoyltransferase activity,
carboxyl- or carbamoyltransferase activity,
histone deacetylase activity,
Arginine_and_proline_metabolism
cellular amino acid metabolic process,
protein transporter activity,
amino acid binding,
details
CFinderM000787TKL-Pl-3 (from iTAK)
RLK-Pelle_LRR-II (from iTAK)
RNA-directed RNA polymerase activity,
protein phosphorylation,
details
CFinderM001068protein import into nucleus,
histone deacetylation,
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
histone deacetylase activity,
details
CFinderM001100RLK-Pelle_RLCK-VIIa-2 (from iTAK)
details
CFinderM001502SET Transcription_Regulator(from iTAK)
ribonucleoprotein complex,
nucleus,
histone_lysine_methylation
RNA processing,
details
CFinderM001832histone deacetylation,
Endocytosis
histone deacetylase activity,
cellular protein metabolic process,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
NAD+ ADP-ribosyltransferase activity,
details
CFinderM001875histone deacetylation,
histone deacetylase activity,
DNA_replication
Mismatch_repair
Nucleotide_excision_repair
DNA_replication
details

4.Expression profilings